糖心原创

Hounsfield Facility: 3D X-ray imaging

Publications

  • Kubale, V., Best, A., Mai, S., Smale, T., Alibhai, A., Perez, W., El-Gendy, S. A., Alsafy, M. A., Sturrock, C. J. and Rutland, C. S. (2025) 'Anatomy, Histology, Aetiology, Development and Functions of Cartilago Cordis: A Systematic Review', Cells Tissues Organs.
  • Mehra, P., Banda, J., Ogorek, L. L. P., Fusi, R., Castrillo, G., Colombi, T., Pandey, B. K., Sturrock, C. J., Wells, D. M. and Bennett, M. J. (2025) 'Root Growth and Development in “Real Life”: Advances and Challenges in 糖心原创ing Root–Environment Interactions', Annual review of plant biology, 76.
  • Pandey, B. K., George, T. S., Cooper, H. V., Sturrock, C. J., Bennett, T. and Bennett, M. J. (2025) 'Root RADAR: how ‘rhizocrine’signals allow roots to detect and respond to their soil environment and stresses', Journal of Experimental Botany, 76(6), pp. 1500-1509.
  • Scharwies, J. D., Clarke, T., Zheng, Z., Dinneny, A., Birkeland, S., Veltman, M. A., Sturrock, C. J., Banda, J., Torres-Martínez, H. H. and Viana, W. G. (2025) 'Moisture-responsive root-branching pathways identified in diverse maize breeding germplasm', Science, 387(6734), pp. 666-673.
  • Wardak, D. L. R., Padia, F. N., de Heer, M. I., Sturrock, C. J. and Mooney, S. J. (2025) 'Zero-Tillage Induces Reduced Bio-Efficacy Against Weed Species Amaranthus retroflexus L. Dependent on Atrazine Formulation', Agronomy, (2), pp. 360.
  • Booth, S. W., Kurtz, B., Heer, M. I. d., Mooney, S. J., & Sturrock, C. J. (2024). Insecticide exposure can increase burrow network production and alter burrow network structure in soil dwelling insects (Agriotes spp.). Pedobiologia, 107, 151000. 10.1016/j.pedobi.2024.151000
  • Alsafy, M. A. M., El-Gendy, S. A. A., Atkinson, B., Sturrock, C. J., Kamal, B. M., Alibhai, A., Abd-Elhafeez, H. H., Soliman, S., Rashwan, A. M., Roshdy, K. and Rutland, C. S. (2024) 'Novel Insights Into the Architecture of Macro and Microstructures in Cattle Ossa Cordis', Microscopy and Microanalysis, 30(3), pp. 574-593. 10.1093/mam/ozae046
  • Wardak, D. L. R., Padia, F. N., de Heer, M. I., Sturrock, C. J. and Mooney, S. J. (2024) 'Zero-tillage induces significant changes to the soil pore network and hydraulic function after 7 years', Geoderma, 447, pp. 10. 10.1016/j.geoderma.2024.116934
  • Fusi, R., Milner, S. G., Rosignoli, S., Bovina, R., Teixeira, C. D. V., Lou, H. Y., Atkinson, B. S., Borkar, A. N., York, L. M., Jones, D. H., Sturrock, C. J., Stein, N., Mascher, M., Tuberosa, R., O'Connor, D., Bennett, M. J., Bishopp, A., Salvi, S. and Bhosale, R. (2024) 'The auxin efflux carrier PIN1a regulates vascular patterning in cereal roots', New Phytologist, 244(1), pp. 104-115. 10.1111/nph.19777
  • Yu, C. L., Mawodza, T., Atkinson, B. S., Atkinson, J. A., Sturrock, C. J., Whalley, R., Hawkesford, M. J., Cooper, H., Zhang, X. X., Zhou, H. and Mooney, S. J. (2024) 'The effects of soil compaction on wheat seedling root growth are specific to soil texture and soil moisture status', Rhizosphere, 29, pp. 8. 10.1016/j.rhisph.2023.100838
  • Cooledge, E. C., Sturrock, C. J., Atkinson, B. S., Mooney, S. J., Brailsford, F. L., Murphy, D. V., Leake, J. R., Chadwick, D. R. and Jones, D. L. (2024) 'Herbal leys have no effect on soil porosity, earthworm abundance, and microbial community composition compared to a grass-clover ley in a sheep grazed grassland after 2-years', Agriculture Ecosystems & Environment, 365, pp. 13. 10.1016/j.agee.2024.108928
  • Stroud, J. L., Kemp, S. J. and Sturrock, C. J. (2024) 'The effect of organic matter amendments on soil surface stability in conventionally cultivated arable fields', Soil Use and Management, 40(1), pp. 12. 10.1111/sum.12985
  • Mawodza, T., Zhou, H., Atkinson, B. S., Atkinson, J. A., Sturrock, C. J., Riche, A. B., Whalley, W. R., Hawkesford, M. J., Cooper, H. V. and Mooney, S. J. (2023) 'Soil structure has a greater effect on the rooting of wheat (Triticumaestivum L.) than nitrogen fertilisation rate or genotype', Rhizosphere, 27, pp. 9. 10.1016/j.rhisph.2023.100770
  • Trusler, M. M., Sturrock, C. J., Vane, C. H., Cook, S. and Lomax, B. H. (2023) 'X-ray computed tomography: A novel non-invasive approach for the detection of microplastics in sediments?', Marine Pollution Bulletin, 194, pp. 7. 10.1016/j.marpolbul.2023.115350
  • Zubrycka, A., Dambire, C., Carbonare, L. D., Sharma, G., Boeckx, T., Swarup, K., Sturrock, C. J., Atkinson, B. S., Swarup, R., Corbineau, F., Oldham, N. J. and Holdsworth, M. J. (2023) 'ERFVII action and modulation through oxygen-sensing in Arabidopsis thaliana', Nature Communications, 14(1), pp. 14. 10.1038/s41467-023-40366-y
  • Dummett, I., Sturrock, C. J. and Stroud, J. L. (2023) 'Monitoring the effects of pesticide pellets to address farmers' concerns on soil fauna, specifically earthworms', Soil Use and Management, 39(3), pp. 1235-1244. 10.1111/sum.12934
  • Xiao, Y., Sloan, J., Hepworth, C., Fradera-Soler, M., Mathers, A., Thorley, R., Baillie, A., Jones, H., Chang, T. E., Chen, X. Y., Yaapar, N., Osborne, C. P., Sturrock, C., Mooney, S. J., Fleming, A. J. and Zhu, X. G. (2023) 'Defining the scope for altering rice leaf anatomy to improve photosynthesis: a modelling approach', New Phytologist, 237(2), pp. 441-453. 10.1111/nph.18564
  • Mehra, P., Pandey, B. K., Melebari, D., Banda, J., Leftley, N., Couvreur, V., Rowe, J., Anfang, M., De Gernier, H., Morris, E., Sturrock, C. J., Mooney, S. J., Swarup, R., Faulkner, C., Beeckman, T., Bhalerao, R. P., Shani, E., Jones, A. M., Dodd, I. C., Sharp, R. E., Sadanandom, A., Draye, X. and Bennett, M. J. (2022) 'Hydraulic flux-responsive hormone redistribution determines root branching', Science, 378(6621), pp. 7. 10.1126/science.add3771
  • Best, A., Egerbacher, M., Swaine, S., Pérez, W., Alibhai, A., Rutland, P., Kubale, V., El-Gendy, S. A. A., Alsafy, M. A. M., Baiker, K., Sturrock, C. J. and Rutland, C. S. (2022) 'Anatomy, histology, development and functions of Ossa cordis: A review', Anatomia Histologia Embryologia, 51(6), pp. 683-695. 10.1111/ahe.12861
  • Fusi, R., Rosignoli, S., Lou, H. Y., Sangiorgi, G., Bovina, R., Pattem, J. K., Borkar, A. N., Lombardi, M., Forestan, C., Milner, S. G., Davis, J. L., Lale, A., Kirschner, G. K., Swarup, R., Tassinari, A., Pandey, B. K., York, L. M., Atkinson, B. S., Sturrock, C. J., Mooney, S. J., Hochholdinger, F., Tucker, M. R., Himmelbach, A., Stein, N., Mascher, M., Nagel, K. A., De Gara, L., Simmonds, J., Uauy, C., Tuberosa, R., Lynch, J. P., Yakubov, G. E., Bennet, M. J., Bhosale, R. and Salvi, S. (2022) 'Root angle is controlled by EGT1 in cereal crops employing an antigravitropic mechanism', Proceedings of the National Academy of Sciences of the United States of America, 119(31), pp. 10. 10.1073/pnas.2201350119
  • Huang, G. Q., Kilic, A., Karady, M., Zhang, J., Mehra, P., Song, X. Y., Sturrock, C. J., Zhu, W. W., Qin, H., Hartman, S., Schneider, H. M., Bhosale, R., Dodd, I. C., Sharp, R. E., Huang, R. F., Mooney, S. J., Liang, W. Q., Bennett, M. J., Zhang, D. B. and Pandey, B. K. (2022) 'Ethylene inhibits rice root elongation in compacted soil via ABA- and auxin-mediated mechanisms', Proceedings of the National Academy of Sciences of the United States of America, 119(30), pp. 10. 10.1073/pnas.2201072119
  • Stroud, J. L., Dummett, I., Kemp, S. J. and Sturrock, C. J. (2023) 'Working with UK farmers to investigate anecic earthworm middens and soil biophysical properties', Annals of Applied Biology, 182(1), pp. 92-100. 10.1111/aab.12795
  • Wardak, D. L. R., Padia, F. N., de Heer, M. I., Sturrock, C. J. and Mooney, S. J. (2022) 'Zero tillage has important consequences for soil pore architecture and hydraulic transport: A review', Geoderma, 422, pp. 11. 10.1016/j.geoderma.2022.115927
  • Booth, S. W., Kurtz, B., de Heer, M. I., Mooney, S. J. and Sturrock, C. J. (2022) 'Activity and burrowing behaviour of wireworms (Agriotes spp.) in the presence or absence of roots', Applied Soil Ecology, 176, pp. 10. 10.1016/j.apsoil.2022.104500
  • Pandey, B. K., Atkinson, J. A. and Sturrock, C. J. (2021) 'Non-invasive Imaging of Rice Roots in Non-compacted and Compacted Soil', Bio-Protocol, 11(24), pp. 13. 10.21769/BioProtoc.4252
  • Kupcsik, L., Chiodi, C., Moturu, T. R., De Gernier, H., Haelterman, L., Louvieaux, J., Tillard, P., Sturrock, C. J., Bennett, M., Nacry, P. and Hermans, C. (2021) 'Oilseed Rape Cultivars Show Diversity of Root Morphologies with the Potential for Better Capture of Nitrogen', Nitrogen, 2(4), pp. 491-505. 10.3390/nitrogen2040033
  • Newsome, R. F., Mostyn, A., Wilson, J. P., Alibhai, A., Bollard, N., Randall, L., Chagunda, M. G. G., Sturrock, C. J., Keane, M., Green, M., Huxley, J. N. and Rutland, C. S. (2021) 'Morphology, adipocyte size, and fatty acid analysis of dairy cattle digital cushions, and the effect of body condition score and age', Journal of Dairy Science, 104(5), pp. 6238-6252. 10.3168/jds.2020-19388
  • Wilson, M. J., Fradera-Soler, M., Summers, R., Sturrock, C. J. and Fleming, A. J. (2021) 'Ploidy influences wheat mesophyll cell geometry, packing and leaf function', Plant Direct, 5(4), pp. 13. 10.1002/pld3.314
  • Su, K., Festring, D., Ayed, C., Yang, Q., Sturrock, C. J., Linforth, R., Foster, T. and Fisk, I. (2021) 'Reducing sugar and aroma in a confectionery gel without compromising flavour through addition of air inclusions', Food Chemistry, 354, pp. 8. 10.1016/j.foodchem.2021.129579
  • Zhou, H., Riche, A. B., Hawkesford, M. J., Whalley, W. R., Atkinson, B. S., Sturrock, C. J. and Mooney, S. J. (2021) 'Determination of wheat spike and spikelet architecture and grain traits using X-ray Computed Tomography imaging', Plant Methods, 17(1), pp. 9. 10.1186/s13007-021-00726-5
  • Mowles, S. L., Skicko, I. M., Sturrock, C. J. and Durrant, K. L. (2021) 'Differential effects of aerobic capacities on fight outcome in giant hissing cockroaches', Animal Behaviour, 173, pp. 241-246. 10.1016/j.anbehav.2021.01.004
  • Zhou, H., Whalley, W. R., Hawkesford, M. J., Ashton, R. W., Atkinson, B., Atkinson, J. A., Sturrock, C. J., Bennett, M. J. and Mooney, S. J. (2021) 'The interaction between wheat roots and soil pores in structured field soil', Journal of Experimental Botany, 72(2), pp. 747-756. 10.1093/jxb/eraa475
  • Blunk, S., Bussell, J., Sparkes, D., de Heer, M. I., Mooney, S. J. and Sturrock, C. J. (2021) 'The effects of tillage on seed-soil contact and seedling establishment', Soil & Tillage Research, 206, pp. 10. 10.1016/j.still.2020.104757
  • Ayed, C., Lim, M., Nawaz, K., Macnaughtan, W., Sturrock, C. J., Hill, S. E., Linforth, R. and Fisk, I. D. (2021) 'The role of sodium chloride in the sensory and physico-chemical properties of sweet biscuits', Food Chemistry-X, 9, pp. 10. 10.1016/j.fochx.2021.100115
  • Pandey, B. K., Huang, G. Q., Bhosale, R., Hartman, S., Sturrock, C. J., Jose, L., Martin, O. C., Karady, M., Voesenek, L., Ljung, K., Lynch, J. P., Brown, K. M., Whalley, W. R., Mooney, S. J., Zhang, D. B. and Bennett, M. J. (2021) 'Plant roots sense soil compaction through restricted ethylene diffusion', Science, 371(6526), pp. 276-+. 10.1126/science.abf3013
  • Jones, D. H., Atkinson, B. S., Ware, A., Sturrock, C. J., Bishopp, A. and Wells, D. M. (2021) 'Preparation, Scanning and Analysis of Duckweed Using X-Ray Computed Microtomography', Frontiers in Plant Science, 11, pp. 17. 10.3389/fpls.2020.617830
  • Schmitz, R., Atkinson, B. S., Sturrock, C. J., Hausmann, L., Töpfer, R. and Herzog, K. (2021) 'High-resolution 3D phenotyping of the grapevine root system using X-ray Computed Tomography', Vitis, 60(1), pp. 21-27. 10.5073/vitis.2021.60.21-27
  • Ojeda-Magaña, B., Ruelas, R., Quintanilla-Domínguez, J., Robledo-Hernández, J. G., Sturrock, C. J., Mooney, S. J. and Tarquis, A. M. (2020) 'Detection and quantification of pore, solid and gravel spaces in CT images of a 3D soil sample', Applied Mathematical Modelling, 85, pp. 360-377. 10.1016/j.apm.2020.04.021
  • Booth, S., Kurtz, B., de Heer, M. I., Mooney, S. J. and Sturrock, C. J. (2020) 'Tracking wireworm burrowing behaviour in soil over time using3D X-ray computed tomography', Pest Management Science, 76(8), pp. 2653-2662. 10.1002/ps.5808
  • Wang, D., Gao, Y., Li, M., Sturrock, C. J., Gregory, A. S. and Zhang, X. X. (2020) 'Change in hydraulic properties of the rhizosphere of maize under different abiotic stresses', Plant and Soil, 452(1-2), pp. 615-626. 10.1007/s11104-020-04592-3
  • Moittié, S., Baiker, K., Strong, V., Cousins, E., White, K., Liptovszky, M., Redrobe, S., Alibhai, A., Sturrock, C. J. and Rutland, C. S. (2020) 'Discovery of os cordis in the cardiac skeleton of chimpanzees (Pan troglodytes)', Scientific Reports, 10(1), pp. 11. 10.1038/s41598-020-66345-7
  • Chapman K, Ivanovici A, Taleski M, Sturrock C J, Ng J L P, Mohd‐Radzman N A, Frugier F, Bennett M J, Mathesius U and Djordjevic M A (2020) CEP receptor signalling controls root system architecture in Arabidopsis and Medicago New Phytologist
  • Rocha KF, de Souza M, Almeida DS, Chadwick DR, Jones DL, Mooney SJ, et al. Cover crops affect the partial nitrogen balance in a maize-forage cropping system. Geoderma. 2020;360.
  • Pires LF, Auler AC, Roque WL, Mooney SJ. X-ray microtomography analysis of soil pore structure dynamics under wetting and drying cycles. Geoderma. 2020;362.
  • Cousins OH, Garnett TP, Rasmussen A, Mooney SJ, Smernik RJ, Brien CJ, et al. Variable water cycles have a greater impact on wheat growth and soil nitrogen response than constant watering. Plant Science. 2020;290.
  • Cimpoiasu MO, Kuras O, Pridmore T, Mooney SJ. Potential of geoelectrical methods to monitor root zone processes and structure: A review. Geoderma. 2020;365.
  • Atkinson JA, Hawkesford MJ, Whalley WR, Zhou H, Mooney SJ. Soil strength influences wheat root interactions with soil macropores. Plant Cell and Environment. 2020;43(1):235-45.
  • Alskaf K, Sparkes DL, Mooney SJ, Sorgersten S, Wilson P. The uptake of different tillage practices in England. Soil Use and Management. 2020;36(1):27-44.
  • Zhou H, Fang H, Zhang Q, Wang Q, Chen C, Mooney SJ, et al. Biochar enhances soil hydraulic function but not soil aggregation in a sandy loam. European Journal of Soil Science. 2019;70(2):291-300.
  • Bishopp A, Bennett M J (2019) Turning Lateral roots into nodules Science 366; 6468, pg 953-954
  • Xiao TT, Raygoza AA, Perez JC, Kirschner G, Deng Y, Atkinson B, et al. Emergent Protective Organogenesis in Date Palms: A Morpho-Devo-Dynamic Adaptive Strategy during Early Development. Plant Cell. 2019;31(8):1751-66.
  • Pratap A, Gupta S, Nair RM, Gupta SK, Schafleitner R, Basu PS, et al. Using Plant Phenomics to Exploit the Gains of Genomics. Agronomy-Basel. 2019;9(3).
  • Pires LF, Roque WL, Rosa JA, Mooney SJ. 3D analysis of the soil porous architecture under long term contrasting management systems by X-ray computed tomography. Soil & Tillage Research. 2019;191:197-206.
  • Pires LF, Mooney SJ, Auler AC, Atkinson B, Sturrock CJ. X-ray microtomography to evaluate the efficacy of paraffin wax coating for soil bulk density evaluation. Geoderma. 2019;337:935-44.
  • Pandey BK, Bennett MJ. A New Angle on How Roots Acclimate to Sporadic Rainfall. Cell. 2019;178(2):269-71.
  • Mao H, Liu Y, Han L, Sheng B, Ma G, Li Y. X-ray computerized tomography for characterization of pick-up destruction and pick-up parameter optimization of tomato root lumps. Spanish Journal of Agricultural Research. 2019;17(2).
  • Lundgren MR, Mathers A, Baillie AL, Dunn J, Wilson MJ, Hunt L, et al. Mesophyll porosity is modulated by the presence of functional stomata. Nature Communications. 2019;10.
  • Lu J, Shao G, Cui J, Wang X, Keabetswe L. Yield, fruit quality and water use efficiency of tomato for processing under regulated deficit irrigation: A meta-analysis. Agricultural Water Management. 2019;222:301-12.
  • Helliwell JR, Sturrock CJ, Miller AJ, Whalley WR, Mooney SJ. The role of plant species and soil condition in the structural development of the rhizosphere. Plant Cell and Environment. 2019;42(6):1974-86.
  • Ge Y, Hawkesford MJ, Rosolem CA, Mooney SJ, Ashton RW, Evans J, et al. Multiple abiotic stress, nitrate availability and the growth of wheat. Soil & Tillage Research. 2019;191:171-84.
  • Galdos MV, Pires LF, Cooper HV, Calonego JC, Rosolem CA, Mooney SJ. Assessing the long-term effects of zero-tillage on the macroporosity of Brazilian soils using X-ray Computed Tomography. Geoderma. 2019;337:1126-35.
  • Diels E, Wang Z, Nicolai B, Ramon H, Smeets B. Discrete element modelling of tomato tissue deformation and failure at the cellular scale. Soft Matter. 2019;15(16):3362-78.
  • Caldwell D, Iyer-Pascuzzi AS. A Scanning Electron Microscopy Technique for Viewing Plant-Microbe Interactions at Tissue and Cell-Type Resolution. Phytopathology. 2019;109(7):1302-11.
  • Blunk S, de Heer MI, Malik AH, Fredlund K, Ekblad T, Sturrock CJ, et al. Seed priming enhances early growth and improves area of soil exploration by roots. Environmental and Experimental Botany. 2019;158:1-11.
  • Bishopp A, Bennett MJ. Turning lateral roots into nodules. Science. 2019;366(6468):953-4.
  • Banda J, Bellande K, von Wangenheim D, Goh T, Guyomarc'h S, Laplaze L, et al. Lateral Root Formation in Arabidopsis: A Well-Ordered LRexit. Trends in Plant Science. 2019;24(9):826-39.
  • Bacq-Labreuil A, Crawford J, Mooney SJ, Neal AL, Ritz K. Cover crop species have contrasting influence upon soil structural genesis and microbial community phenotype. Scientific Reports. 2019;9.
  • Bacq-Labreuil A, Crawford J, Mooney SJ, Neal AL, Ritz K. Phacelia (Phacelia tanacetifolia Benth.) affects soil structure differently depending on soil texture. Plant and Soil. 2019;441(1-2):543-54.
  • Atkinson JA, Pound MP, Bennett MJ, Wells DM. Uncovering the hidden half of plants using new advances in root phenotyping. Current Opinion in Biotechnology. 2019;55:1-8.
  • Al-Agele R, Paul E, Taylor S, Watson C, Sturrock C, Drakopoulos M, et al. Physics of animal health: on the mechano-biology of hoof growth and form. Journal of the Royal Society Interface. 2019;16(155).
  • Wang LL, Guo MX, Li Y, Ruan WY, Mo XR, Wu ZC, et al. LARGE ROOT ANGLE1, encoding OsPIN2, is involved in root system architecture in rice. Journal of Experimental Botany. 2018;69(3):385-97.
  • Sun Z, Song J, Xin Xa, Xie X, Zhao B. Arbuscular mycorrhizal fungal 14-3-3 proteins are involved in arbuscule formation and responses to abiotic stresses during AM symbiosis. Frontiers in microbiology. 2018;9:91.
  • Orosa-Puente B, Leftley N, von Wangenheim D, Banda J, Srivastava AK, Hill K, et al. Root branching toward water involves posttranslational modification of transcription factor ARF7. Science. 2018;362(6421):1407-+.
  • Orman-Ligeza B, Morris EC, Parizot B, Lavigne T, Babe A, Ligeza A, et al. The Xerobranching Response Represses Lateral Root Formation When Roots Are Not in Contact with Water. Current Biology. 2018;28(19):3165-+.
  • Mathers AW, Hepworth C, Baillie AL, Sloan J, Jones H, Lundgren M, et al. Investigating the microstructure of plant leaves in 3D with lab-based X-ray computed tomography. Plant Methods. 2018;14.
  • Huang GQ, Liang WQ, Sturrock CJ, Pandey BK, Giri J, Mairhofer S, et al. Rice actin binding protein RMD controls crown root angle in response to external phosphate. Nature Communications. 2018;9.
  • Grayling KM, Young SD, Roberts CJ, de Heer MI, Shirley IM, Sturrock CJ, et al. The application of X-ray micro Computed Tomography imaging for tracing particle movement in soil. Geoderma. 2018;321:8-14.
  • Giri J, Bhosale R, Huang GQ, Pandey BK, Parker H, Zappala S, et al. Rice auxin influx carrier OsAUX1 facilitates root hair elongation in response to low external phosphate. Nature Communications. 2018;9.
  • Garbout A, Sturrock CJ, Armenise E, Ahn S, Simmons RW, Doerr S, et al. TopCap: A Tool to Quantify Soil Surface Topology and Subsurface Structure. Vadose Zone Journal. 2018;17(1).
  • Fry EL, Evans AL, Sturrock CJ, Bullock JM, Bardgett RD. Root architecture governs plasticity in response to drought. Plant and Soil. 2018;433(1-2):189-200.
  • French E, Kim BS, Rivera-Zuluaga K, Iyer-Pascuzzi AS. Whole Root Transcriptomic Analysis Suggests a Role for Auxin Pathways in Resistance to Ralstonia solanacearum in Tomato. Molecular Plant-Microbe Interactions. 2018;31(4):432-44.
  • Fang H, Zhou H, Norton GJ, Price AH, Raffan AC, Mooney SJ, et al. Interaction between contrasting rice genotypes and soil physical conditions induced by hydraulic stresses typical of alternate wetting and drying irrigation of soil. Plant and Soil. 2018;430(1-2):233-43.
  • Daly KR, Tracy SR, Crout NMJ, Mairhofer S, Pridmore TP, Mooney SJ, et al. Quantification of root water uptake in soil using X-ray computed tomography and image-based modelling. Plant Cell and Environment. 2018;41(1):121-33.
  • Burr-Hersey JE, Mooney SJ, Bengough AG, Mairhofer S, Ritz K. Developmental morphology of cover crop species exhibit contrasting behaviour to changes in soil bulk density, revealed by X-ray computed tomography (vol 12, e0181872, 2017). Plos One. 2018;13(1).
  • Blunk S, de Heer MI, Sturrock CJ, Mooney SJ. Soil seedbed engineering and its impact on germination and establishment in sugar beet (Beta vulgaris L.) as affected by seed-soil contact. Seed Science Research. 2018;28(3):236-44.
  • Bhosale R, Giri J, Pandey BK, Giehl RFH, Hartmann A, Trainil R, et al. A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate (vol 9, 1818, 2018). Nature Communications. 2018;9.
  • Bacq-Labreuil A, Crawford J, Mooney SJ, Neal AL, Akkari E, McAuliffe C, et al. Effects of cropping systems upon the three-dimensional architecture of soil systems are modulated by texture. Geoderma. 2018;332:73-83.
  • Armenise E, Simmons RW, Ahn S, Garbout A, Doerr SH, Mooney SJ, et al. Soil seal development under simulated rainfall: Structural, physical and hydrological dynamics. Journal of Hydrology. 2018;556:211-9.
  • Zhou H, Mooney SJ, Peng XH. Bimodal Soil Pore Structure Investigated by a Combined Soil Water Retention Curve and X-Ray Computed Tomography Approach. Soil Science Society of America Journal. 2017;81(6):1270-8.
  • Zhou H, Fang H, Hu CS, Mooney SJ, Dong WX, Peng XH. Inorganic Fertilization Effects on the Structure of a Calcareous Silt Loam Soil. Agronomy Journal. 2017;109(6):2871-80.
  • Zhao JS, Rewald B, Lazarovitch N, Rachmilevitch S. Plasticity of biomass allometry and root traits of two tomato cultivars under deficit irrigation x chemically induced drought hardening by Paclobutrazol. Irrigation Science. 2017;35(6):501-14.
  • Tracy SR, Gomez JF, Sturrock CJ, Wilson ZA, Ferguson AC. Non-destructive determination of floral staging in cereals using X-ray micro computed tomography (mu CT). Plant Methods. 2017;13.
  • Rosolem CA, Ritz K, Cantarella H, Galdos MV, Hawkesford MJ, Whalley WR, et al. Enhanced Plant Rooting and Crop System Management for Improved N Use Efficiency. In: Sparks DL, editor. Advances in Agronomy, Vol 146. Advances in Agronomy. 1462017. p. 205-39.
  • Riley A, Sturrock CJ, Mooney SJ, Luck MR. Quantification of eggshell microstructure using X-ray micro computed tomography (vol 55, pg 311, 2014). British Poultry Science. 2017;58(2):207-.
  • Razavi BS, Hoang DTT, Blagodatskaya E, Kuzyakov Y. Mapping the footprint of nematodes in the rhizosphere: Cluster root formation and spatial distribution of enzyme activities. Soil Biology & Biochemistry. 2017;115:213-20.
  • Morris EC, Griffiths M, Golebiowska A, Mairhofer S, Burr-Hersey J, Goh T, et al. Shaping 3D Root System Architecture. Current Biology. 2017;27(17):R919-R30.
  • Mairhofer S, Pridmore T, Johnson J, Wells DM, Bennett MJ, Mooney SJ, et al. X-Ray Computed Tomography of Crop Plant Root Systems Grown in Soil. Current Protocols in Plant Biology. 2017;2(4):270-86.
  • Magalhaes JV, de Sousa SM, Guimaraes CT, Kochian LV. THE ROLE OF ROOT MORPHOLOGY AND ARCHITECTURE IN PHOSPHORUS ACQUISITION: PHYSIOLOGICAL, GENETIC, AND MOLECULAR BASIS. Hossain MA, Kamiya T, Burritt DJ, Tran LSP, Fujiwara T, editors2017. 123-47 p.
  • Lehmeier C, Pajor R, Lundgren MR, Mathers A, Sloan J, Bauch M, et al. Cell density and airspace patterning in the leaf can be manipulated to increase leaf photosynthetic capacity. Plant Journal. 2017;92(6):981-94.
  • Kenobi K, Atkinson JA, Wells DM, Gaju O, De Silva JG, Foulkes MJ, et al. Linear discriminant analysis reveals differences in root architecture in wheat seedlings related to nitrogen uptake efficiency. Journal of Experimental Botany. 2017;68(17):4969-81.
  • Hudek C, Sturrock CJ, Atkinson BS, Stanchi S, Freppaz M. Root morphology and biomechanical characteristics of high altitude alpine plant species and their potential application in soil stabilization. Ecological Engineering. 2017;109:228-39.
  • Helliwell JR, Sturrock CJ, Mairhofer S, Craigon J, Ashton RW, Miller AJ, et al. The emergent rhizosphere: imaging the development of the porous architecture at the root-soil interface. Scientific Reports. 2017;7.
  • Flavel RJ, Guppy CN, Rabbi SMR, Young IM. An image processing and analysis tool for identifying and analysing complex plant root systems in 3D soil using non-destructive analysis: Root1. Plos One. 2017;12(5):18.
  • Fitters TFJ, Bussell JS, Mooney SJ, Sparkes DL. Assessing water uptake in sugar beet (Beta vulgaris) under different watering regimes. Environmental and Experimental Botany. 2017;144:61-7.
  • Filho A, Crusciol CAC, Guimaraes TM, Calonego JC, Mooney SJ. Impact of Amendments on the Physical Properties of Soil under Tropical Long-Term No Till Conditions (vol 11, e0167564, 2016). Plos One. 2017;12(2).
  • Dietrich D, Pang L, Kobayashi A, Fozard JA, Boudolf V, Bhosale R, et al. Root hydrotropism is controlled via a cortex-specific growth mechanism. Nature Plants. 2017;3(6).
  • Burr-Hersey JE, Mooney SJ, Bengough AG, Mairhofer S, Ritz K. Developmental morphology of cover crop species exhibit contrasting behaviour to changes in soil bulk density, revealed by X-ray computed tomography. Plos One. 2017;12(7).
  • Brackin R, Atkinson BS, Sturrock CJ, Rasmussen A. Roots-eye view: Using microdialysis and microCT to non-destructively map root nutrient depletion and accumulation zones. Plant Cell and Environment. 2017;40(12):3135-42.
  • Bont Z, Arce C, Huber M, Huang W, Mestrot A, Sturrock CJ, et al. A Herbivore Tag-and-Trace System Reveals Contact-and Density-Dependent Repellence of a Root Toxin. Journal of Chemical Ecology. 2017;43(3):295-306.
  • Blunk S, Malik AH, de Heer MI, Ekblad T, Fredlund K, Mooney SJ, et al. Quantification of differences in germination behaviour of pelleted and coated sugar beet seeds using x-ray computed tomography (x-ray CT). Biomedical Physics & Engineering Express. 2017;3(4).
  • Blunk S, Malik AH, de Heer MI, Ekblad T, Bussell J, Sparkes D, et al. Quantification of seed-soil contact of sugar beet (Beta vulgaris) using X-ray Computed Tomography. Plant Methods. 2017;13.
  • Adu MO, Yawson DO, Bennett MJ, Broadley MR, Dupuy LX, White PJ. A scanner-based rhizobox system enabling the quantification of root system development and response of Brassica rapa seedlings to external P availability. Plant Root. 2017;11:16-+.
  • Zhou H, Fang H, Mooney SJ, Peng XH. Effects of long-term inorganic and organic fertilizations on the soil micro and macro structures of rice paddies. Geoderma. 2016;266:66-74.
  • York LM, Carminati A, Mooney SJ, Ritz K, Bennett MJ. The holistic rhizosphere: integrating zones, processes, and semantics in the soil influenced by roots. Journal of Experimental Botany. 2016;67(12):3629-43.
  • Tracy SR, Daly KR, Sturrock CJ, Crout NMJ, Mooney SJ, Roose T. Reply to comment by X. X. Zhang et al. on "Three-dimensional quantification of soil hydraulic properties using X-ray computed tomography and image-based modeling''. Water Resources Research. 2016;52(7):5691-3.
  • Topp CN, Bray AL, Ellis NA, Liu ZB. How can we harness quantitative genetic variation in crop root systems for agricultural improvement? Journal of Integrative Plant Biology. 2016;58(3):213-25.
  • Thomas CL, Graham NS, Hayden R, Meacham MC, Neugebauer K, Nightingale M, et al. High-throughput phenotyping (HTP) identifies seedling root traits linked to variation in seed yield and nutrient capture in field-grown oilseed rape (Brassica napus L.). Annals of Botany. 2016;118(4):655-65.
  • Thom H, Greene S, Alexander V, Ramsay V, Bluff S, McKenzie L, et al. Initiation of insulin adjustment for carbohydrate at onset of diabetes in children using a home-based education programme with a bolus calculator. Practical Diabetes. 2016;33(1):19-+.
  • Salvioli A, Ghignone S, Novero M, Navazio L, Venice F, Bagnaresi P, et al. Symbiosis with an endobacterium increases the fitness of a mycorrhizal fungus, raising its bioenergetic potential. The ISME Journal. 2016;10(1):130-44.
  • Rogers ED, Monaenkova D, Mijar M, Nori A, Goldman DI, Benfey PN. X-Ray Computed Tomography Reveals the Response of Root System Architecture to Soil Texture. Plant Physiology. 2016;171(3):2028-40.
  • Pineros MA, Larson BG, Shaff JE, Schneider DJ, Falcao AX, Yuan L, et al. Evolving technologies for growing, imaging and analyzing 3D root system architecture of crop plants. Journal of Integrative Plant Biology. 2016;58(3):230-41.
  • Passot S, Gnacko F, Moukouanga D, Lucas M, Guyomarc'h S, Ortega BM, et al. Characterization of Pearl Millet Root Architecture and Anatomy Reveals Three Types of Lateral Roots. Frontiers in Plant Science. 2016;7.
  • Newsome R, Green MJ, Bell NJ, Chagunda MGG, Mason CS, Rutland CS, et al. Linking bone development on the caudal aspect of the distal phalanx with lameness during life. Journal of Dairy Science. 2016;99(6):4512-25.
  • Mommer L, Kirkegaard J, van Ruijven J. Root–root interactions: towards a rhizosphere framework. Trends in Plant Science. 2016;21(3):209-17.
  • Mairhofer S, Johnson J, Sturrock CJ, Bennett MJ, Mooney SJ, Pridmore TP. Visual tracking for the recovery of multiple interacting plant root systems from X-ray CT images. Machine Vision and Applications. 2016;27(5):721-34.
  • Lazarevic B, Sturrock CJ, Poljak M, Mooney SJ. Quantification of Aluminum-Induced Changes in Wheat Root Architecture by X-ray Microcomputed Tomography. Communications in Soil Science and Plant Analysis. 2016;47(2):263-74.
  • Kumi F, Mao H, Li Q, Luhua H. Assessment of tomato seedling substrate-root quality using X-ray computed tomography and scanning electron microscopy. Applied Engineering in Agriculture. 2016;32(4):417-27.
  • Koevoets IT, Venema JH, Elzenga JTM, Testerink C. Roots Withstanding their Environment: Exploiting Root System Architecture Responses to Abiotic Stress to Improve Crop Tolerance. Frontiers in Plant Science. 2016;7.
  • Jeudy C, Adrian M, Baussard C, Bernard C, Bernaud E, Bourion V, et al. RhizoTubes as a new tool for high throughput imaging of plant root development and architecture: test, comparison with pot grown plants and validation. Plant Methods. 2016;12.
  • Durrant KL, Skicko IM, Sturrock C, Mowles SL. Comparative morphological trade-offs between pre- and post-copulatory sexual selection in Giant hissing cockroaches (Tribe: Gromphadorhini). Scientific Reports. 2016;6.
  • Delory BM, Baudson C, Brostaux Y, Lobet G, du Jardin P, Pages L, et al. archiDART: an R package for the automated computation of plant root architectural traits. Plant and Soil. 2016;398(1-2):351-65.
  • Carmeis ACA, Crusciol CAC, Guimaraes TM, Calonego JC, Mooney SJ. Impact of Amendments on the Physical Properties of Soil under Tropical Long-Term No Till Conditions. Plos One. 2016;11(12).
  • Zeng XS, Mooney SJ, Sturrock CJ. Assessing the effect of fibre extraction processes on the strength of flax fibre reinforcement. Composites Part a-Applied Science and Manufacturing. 2015;70:1-7.
  • Walter A, Liebisch F, Hund A. Plant phenotyping: from bean weighing to image analysis. Plant Methods. 2015;11.
  • Uga Y, Kitomi Y, Ishikawa S, Yano M. Genetic improvement for root growth angle to enhance crop production. Breeding Science. 2015;65(2):111-9.
  • Tracy SR, Mooney SJ, Sturrock CJ, Mairhofer S, Al-Traboulsi M, Bennett MJ, et al. Laboratory and Field Techniques for Measuring Root Distribution and Architecture. Ong CK, Black CR, Wilson J, editors2015. 258-77 p.
  • Tracy SR, Daly KR, Sturrock CJ, Crout NMJ, Mooney SJ, Roose T. Three-dimensional quantification of soil hydraulic properties using X-ray Computed Tomography and image-based modeling. Water Resources Research. 2015;51(2):1006-22.
  • Tracy SR, Black CR, Roberts JA, Dodd IC, Mooney SJ. Using X-ray Computed Tomography to explore the role of abscisic acid in moderating the impact of soil compaction on root system architecture. Environmental and Experimental Botany. 2015;110:11-8.
  • Sturrock CJ, Woodhal J, Brown M, Walker C, Mooney SJ, Ray RV. Effects of damping-off caused by Rhizoctonia solani anastomosis group 2-1 on roots of wheat and oil seed rape quantified using X-ray Computed Tomography and real-time PCR. Frontiers in Plant Science. 2015;6.
  • Strange H, Zwiggelaar R, Sturrock C, Mooney SJ, Doonan JH. Automatic estimation of wheat grain morphometry from computed tomography data. Functional Plant Biology. 2015;42(5):452-9.
  • Robbins NE, II, Dinneny JR. The divining root: moisture-driven responses of roots at the micro- and macro-scale. Journal of Experimental Botany. 2015;66(8):2145-54.
  • Richard CAI, Hickey LT, Fletcher S, Jennings R, Chenu K, Christopher JT. High-throughput phenotyping of seminal root traits in wheat. Plant Methods. 2015;11.
  • Pfeifer J, Kirchgessner N, Colombi T, Walter A. Rapid phenotyping of crop root systems in undisturbed field soils using X-ray computed tomography. Plant Methods. 2015;11.
  • Monaenkova D, Gravish N, Rodriguez G, Kutner R, Goodisman MAD, Goldman DI. Behavioral and mechanical determinants of collective subsurface nest excavation. Journal of Experimental Biology. 2015;218(9):1295-305.
  • Mangalassery S, Sjogersten S, Sparkes DL, Mooney SJ. Examining the potential for climate change mitigation from zero tillage. Journal of Agricultural Science. 2015;153(7):1151-73.
  • Mangalassery S, Mooney SJ, Sparkes DL, Fraser WT, Sjogersten S. Impacts of zero tillage on soil enzyme activities, microbial characteristics and organic matter functional chemistry in temperate soils. European Journal of Soil Biology. 2015;68:9-17.
  • Mairhofer S, Sturrock CJ, Bennett MJ, Mooney SJ, Pridmore TP. Visual Object Tracking for the Extraction of Multiple Interacting Plant Root Systems. In: Agapito L, Bronstein MM, Rother C, editors. Computer Vision - Eccv 2014 Workshops, Pt Iv. Lecture Notes in Computer Science. 89282015. p. 89-104.
  • Mairhofer S, Sturrock CJ, Bennett MJ, Mooney SJ, Pridmore TP. Extracting multiple interacting root systems using X-ray microcomputed tomography. Plant Journal. 2015;84(5):1034-43.
  • Mairhofer S, Sturrock C, Wells DM, Bennett MJ, Mooney SJ, Pridmore TP. On the evaluation of methods for the recovery of plant root systems from X-ray computed tomography images. Functional Plant Biology. 2015;42(5):460-70.
  • Lynch JP, Wojciechowski T. Opportunities and challenges in the subsoil: pathways to deeper rooted crops. Journal of Experimental Botany. 2015;66(8):2199-210.
  • Kuijken RCP, van Eeuwijk FA, Marcelis LFM, Bouwmeester HJ. Root phenotyping: from component trait in the lab to breeding. Journal of Experimental Botany. 2015;66(18):5389-401.
  • Downie HF, Adu MO, Schmidt S, Otten W, Dupuy LX, White PJ, et al. Challenges and opportunities for quantifying roots and rhizosphere interactions through imaging and image analysis. Plant Cell and Environment. 2015;38(7):1213-32.
  • Das A, Schneider H, Burridge J, Ascanio AKM, Wojciechowski T, Topp CN, et al. Digital imaging of root traits (DIRT): a high-throughput computing and collaboration platform for field-based root phenomics. Plant Methods. 2015;11.
  • Daly KR, Mooney SJ, Bennett MJ, Crout NMJ, Roose T, Tracy SR. Assessing the influence of the rhizosphere on soil hydraulic properties using X-ray computed tomography and numerical modelling. Journal of Experimental Botany. 2015;66(8):2305-14.
  • Archer SC, Newsome R, Dibble H, Sturrock CJ, Chagunda MGG, Mason CS, et al. Claw length recommendations for dairy cow foot trimming. Veterinary Record. 2015;177(9).

 

  • MANGALASSERY S, MOONEY SJ, SPARKES DL, FRASER WT and JOGERSTEN S, 2015. . European Journal of Soil Biology.
  • TRACY SR, DALY KR, STURROCK CJ, MOONEY SJ, BENNETT MJ, CROUT NMJ, ROOSE T, 2015. .
  • MAIRHOFER S, STURROCK CJ, BENNETT MJ, MOONEY SJ, and PRIDMORE TP, 2015.  . Lecture Notes in Computer Science.
  • DALY KR, MOONEY SJ, BENNETT MJ, CROUT NMJ, ROOSE T, TRACY SR, 2014. . Journal of Experimental Botany (in press)
  • STRANGE H, ZWIGGELAAR R, STURROCK C, MOONEY S, DOONAN J, 2014. . Functional Plant Biology.
  • TRACY SR, BLACK CR, ROBERTS JA, DODD I and MOONEY SJ, 2014. . Environmental and Experimental Botany.
  • MAIRHOFER S, STURROCK CJ, WELLS DM, BENNETT MJ, MOONEY SJ and PRIDMORE TP, 2014. . Functional Plant Biology.
  • HELLIWELL JR, MILLER AJ, WHALLEY WR, MOONEY SJ and STURROCK CJ, 2014.  . Soil Biology and Biochemistry. 
  • BAO Y, AGGARWAL P, ROBBINS NE, STURROCK CJ, THOMPSON MC, TAN HAN Q, THAM C, DUAN L, RODRIGUEZ PL, VERNOUX T, MOONEY SJ, BENNETT MJ and DINNENY JR, 2014.  . Proceedings of the National Academy of Science.
  • MAIRHOFER S, ZAPPALA S, TRACY S, STURROCK CJ, BENNETT MJ, MOONEY SJ and PRIDMORE TP, 2013.  . Plant Methods.
  • PAJOR R, FLEMING A, OSBORNE CP, ROLFE SA, STURROCK CJ and MOONEY SJ, 2013.  . Journal of Experimental Botany. 
  • ZAPPALA S, MAIRHOFER S, TRACY S, STURROCK CJ, BENNETT M, PRIDMORE T and MOONEY SJ, 2013. . Plant and Soil. 
  • ZAPPALA S, HELLIWELL JR, TRACY SR, MAIRHOFER S, STURROCK CJ, PRIDMORE T, BENNETT M and MOONEY SJ, 2013.  . Plos One. 
  • HELLIWELL JR, STURROCK CJ, GRAYLING KM, TRACY SR, FLAVEL RJ, YOUNG IM, WHALLEY WR and MOONEY SJ, 2013.  . European Journal of Soil Science. 
  • DORCA-FORNELL C, PAJOR R, LEHMEIER C, PÉREZ-BUENO M, BAUCH M, SLOAN J, OSBORNE C, ROLFE S, STURROCK C, MOONEY S and FLEMING A, 2013.  . Plant Journal.

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email: craig.sturrock@nottingham.ac.uk