RAMOS-IBEAS P, SANG F, ZHU Q, TANG WWC, WITHEY S, KLISCH D, WOOD L, LOOSE M, SURANI MA and ALBERIO R, 2019. Nature communications. 10(1), 500
SLOAN, TIM J., TURTON, JAMES C., TYSON, JESS, MUSGROVE, ALISON, FLEMING, VICKI M., LISTER, MICHELLE M., LOOSE, MATTHEW W., SOCKETT, R. ELIZABETH, DIGGLE, MATHEW, GAME, FRANCES L. and JEFFCOATE, WILLIAM, 2019. JOURNAL OF MEDICAL MICROBIOLOGY. 68(2), 230-240
WORKMAN, RACHAEL E, TANG, ALISON D, TANG, PAUL S, JAIN, MITEN, TYSON, JOHN R, RAZAGHI, ROHAM, ZUZARTE, PHILIP C, GILPATRICK, TIMOTHY, PAYNE, ALEXANDER, QUICK, JOSHUA, SADOWSKI, NORAH, HOLMES, NADINE, DE JESUS, JAQUELINE GOES, JONES, KAREN L, SOULETTE, CAMERON M, SNUTCH, TERRANCE P, LOMAN, NICHOLAS, PATEN, BENEDICT, LOOSE, MATTHEW, SIMPSON, JARED T, OLSEN, HUGH E, BROOKS, ANGELA N, AKESON, MARK and TIMP, WINSTON, 2019. Nanopore native RNA sequencing of a human poly(A) transcriptome. Nature methods. 16(12), 1297-1305
WORKMAN, RACHAEL E, TANG, ALISON D, TANG, PAUL S, JAIN, MITEN, TYSON, JOHN R, RAZAGHI, ROHAM, ZUZARTE, PHILIP C, GILPATRICK, TIMOTHY, PAYNE, ALEXANDER, QUICK, JOSHUA, SADOWSKI, NORAH, HOLMES, NADINE, DE JESUS, JAQUELINE GOES, JONES, KAREN L, SOULETTE, CAMERON M, SNUTCH, TERRANCE P, LOMAN, NICHOLAS, PATEN, BENEDICT, LOOSE, MATTHEW, SIMPSON, JARED T, OLSEN, HUGH E, BROOKS, ANGELA N, AKESON, MARK and TIMP, WINSTON, 2019. Author Correction: Nanopore native RNA sequencing of a human poly(A) transcriptome. Nature methods.
PAYNE, ALEXANDER, HOLMES, NADINE, RAKYAN, VARDHMAN and LOOSE, MATTHEW, 2019. BulkVis: a graphical viewer for Oxford nanopore bulk FAST5 files BIOINFORMATICS. 35(13), 2193-2198
KOREN, SERGEY, PHILLIPPY, ADAM M., SIMPSON, JARED T., LOMAN, NICHOLAS J. and LOOSE, MATTHEW, 2019. Reply to 'Errors in long-read assemblies can critically affect protein prediction' NATURE BIOTECHNOLOGY. 37(2), 127-128
EVANS T, D JOHNSON A and LOOSE M, 2018. Scientific reports. 8(1), 618
JAIN M, KOREN S, MIGA KH, QUICK J, RAND AC, SASANI TA, TYSON JR, BEGGS AD, DILTHEY AT, FIDDES IT, MALLA S, MARRIOTT H, NIETO T, O'GRADY J, OLSEN HE, PEDERSEN BS, RHIE A, RICHARDSON H, QUINLAN AR, SNUTCH TP, TEE L, PATEN B, PHILLIPPY AM, SIMPSON JT, LOMAN NJ and LOOSE M, 2018. Nature biotechnology. (In Press.)
QUICK J, GRUBAUGH ND, PULLAN ST, CLARO IM, SMITH AD, GANGAVARAPU K, OLIVEIRA G, ROBLES-SIKISAKA R, ROGERS TF, BEUTLER NA, BURTON DR, LEWIS-XIMENEZ LL, DE JESUS JG, GIOVANETTI M, HILL SC, BLACK A, BEDFORD T, CARROLL MW, NUNES M, ALCANTARA LC, SABINO EC, BAYLIS SA, FARIA NR, LOOSE M, SIMPSON JT, PYBUS OG, ANDERSEN KG and LOMAN NJ, 2017. Nature protocols. 12(6), 1261-1276
FARIA NR, QUICK J, CLARO IM, TH脡Z脡 J, DE JESUS JG, GIOVANETTI M, KRAEMER MUG, HILL SC, BLACK A, DA COSTA AC, FRANCO LC, SILVA SP, WU CH, RAGHWANI J, CAUCHEMEZ S, DU PLESSIS L, VEROTTI MP, DE OLIVEIRA WK, CARMO EH, COELHO GE, SANTELLI ACFS, VINHAL LC, HENRIQUES CM, SIMPSON JT, LOOSE M, ANDERSEN KG, GRUBAUGH ND, SOMASEKAR S, CHIU CY, MU脩OZ-MEDINA JE, GONZALEZ-BONILLA CR, ARIAS CF, LEWIS-XIMENEZ LL, BAYLIS SA, CHIEPPE AO, AGUIAR SF, FERNANDES CA, LEMOS PS, NASCIMENTO BLS, MONTEIRO HAO, SIQUEIRA IC, DE QUEIROZ MG, DE SOUZA TR, BEZERRA JF, LEMOS MR, PEREIRA GF, LOUDAL D, MOURA LC, DHALIA R, FRAN脟A RF, MAGALH脙ES T, MARQUES ET, JAENISCH T, WALLAU GL, DE LIMA MC, NASCIMENTO V, DE CERQUEIRA EM, DE LIMA MM, MASCARENHAS DL, NETO JPM, LEVIN AS, TOZETTO-MENDOZA TR, FONSECA SN, MENDES-CORREA MC, MILAGRES FP, SEGURADO A, HOLMES EC, RAMBAUT A, BEDFORD T, NUNES MRT, SABINO EC, ALCANTARA LCJ, LOMAN NJ and PYBUS OG, 2017. Nature. (In Press.)
VOTINTSEVA AA, BRADLEY P, PANKHURST L, DEL OJO ELIAS C, LOOSE M, NILGIRIWALA K, CHATTERJEE A, SMITH EG, SANDERSON N, WALKER TM, MORGAN MR, WYLLIE DH, WALKER AS, PETO TEA, CROOK DW and IQBAL Z, 2017. Journal of clinical microbiology. 55(5), 1285-1298
LOOSE MW, 2017. Human molecular genetics. 26(R2), R202-R207
JAIN M, TYSON JR, LOOSE M, IP CLC, ECCLES DA, O'GRADY J, MALLA S, LEGGETT RM, WALLERMAN O, JANSEN HJ, ZALUNIN V, BIRNEY E, BROWN BL, SNUTCH TP, OLSEN HE and , 2017. F1000Research. 6, 760
BROWN, L. E., MIDDLETON, A. M., KING, J. R. and LOOSE, M., 2016. Bull. Math. Biol..
LOOSE M, MALLA S and STOUT M, 2016. Nature Methods.
LOOSE M, MALLA S and STOUT M, 2016. Nature methods. 13(9), 751-4
BATES, MATTHEW, POLEPOLE, PASCAL, KAPATA, NATHAN, LOOSE, MATT and O'GRADY, JUSTIN, 2016. Application of highly portable MinION nanopore sequencing technology for the monitoring of nosocomial tuberculosis infection. International journal of mycobacteriology. 5 Suppl 1, S24
EVANS, T. and LOOSE, M., 2015. BMC Bioinformatics. 16, 376
IP, C. L., LOOSE, M., TYSON, J. R., DE CESARE, M., BROWN, B. L., JAIN, M., LEGGETT, R. M., ECCLES, D. A., ZALUNIN, V., URBAN, J. M., PIAZZA, P., BOWDEN, R. J., PATEN, B., MWAIGWISYA, S., BATTY, E. M., SIMPSON, J. T., SNUTCH, T. P., BIRNEY, E., BUCK, D., GOODWIN, S., JANSEN, H. J., O'GRADY, J. and OLSEN, H. E., 2015. MinION Analysis and Reference Consortium: Phase 1 data release and analysis F1000Res. 4, 1075
LOMAN, NICK, GOODWIN, SARAH, JANSEN, HANS and LOOSE, MATT, 2015. A disruptive sequencer meets disruptive publishing. F1000Research. 4, 1074
BROWN WRA, THOMAS G, LEE NCO, BLYTHE M, LITI G, WARRINGER J and LOOSE MW, 2014. Proceedings of the National Academy of Sciences of the United States of America. 111(5), 1903-8
BROWN LE, KING JR and LOOSE M, 2014. Journal of theoretical biology. 353C, 67-77 (In Press.)
EVANS T, WADE CM, CHAPMAN FA, JOHNSON AD and LOOSE M, 2014. Science (New York, N.Y.). 344(6180), 200-3
CHATFIELD J, O'REILLY M, BACHVAROVA RF, FERJENTSIK Z, REDWOOD C, WALMSLEY M, PATIENT R, LOOSE M and JOHNSON AD, 2014. Development (Cambridge, England). 141(12), 2429-40
WHELDON LM, ABAKIR A, FERJENTSIK Z, DUDNAKOVA T, STROHBUECKER S, CHRISTIE D, DAI N, GUAN S, FOSTER JM, CORR脢A IR, LOOSE M, DIXON JE, SOTTILE V, JOHNSON AD and RUZOV A, 2014. Cell reports. 7(5), 1353-61
CHEN, WEI-CHUNG, PAULS, STEFAN, BACHA, JAMIL, ELGAR, GREG, LOOSE, MATTHEW and SHIMELD, SEBASTIAN M., 2014. DEVELOPMENTAL BIOLOGY. 390(2), 261-272
P. BOKES, J. R. KING, A. T. A. WOOD and M. LOOSE, 2013. Transcriptional bursting diversifies the behaviour
of a toggle switch: hybrid simulation of stochastic gene expression Bulletin of Mathematical Biology. 75, 351-371
LOOSE M, PATIENT R, FANG X and LEI H, 2013. Genomics, proteomics & bioinformatics. 11(3), 133-4
MIDDLETON AM, KING JR and LOOSE M, 2013. Journal of mathematical biology. 67(6-7), 1393-424
BOKES, P., KING, J.R., WOOD, A.T.A. and LOOSE, M., 2012. Journal of Mathematical Biology. 64(5), 829-854
ALMEIDA, R.D., LOOSE, M., SOTTILE, V., MATSA, E., DENNING, C., YOUNG, L., JOHNSON, A.D., GERING, M. and RUZOV, A., 2012. Epigenetics. 7(4), 383-389
ALMEIDA, R.D., SOTTILE, V., LOOSE, M., DE SOUSA, P.A., JOHNSON, A.D. and RUZOV, A., 2012. Epigenetics. 7(2), 137-140
BOKES, PAVOL, KING, JOHN R., WOOD, ANDREW T. A. and LOOSE, MATTHEW, 2012. JOURNAL OF MATHEMATICAL BIOLOGY. 65(3), 493-520
D. DE POMERAI1, C. ANBALAGAN1, I. LAFAYETTE1, D. RAJAGOPALAN1, M. LOOSE1, M. HAQUE2 & J. KING2, 2010. High-throughput analysis of multiple stress pathways using GFP reporters in C. elegans.. In: Environmental Toxicology III Wessex Institute for Technology Press. (In Press.)
SWIERS, G., CHEN, Y-H., JOHNSON, A.D. and LOOSE, M., 2010. Developmental Biology. 343(1-2), 138-152
COOPER, M.B, LOOSE, M and BROOKFIELD, J.F.Y., 2009. Biosystems. 96, 185-93
MIDDLETON, A.M., KING, J.R. and LOOSE, M., 2009. Journal of Theoretical Biology. 260(1), 41-55
BACHA, J., BRODIE, J.S. and LOOSE, M.W., 2009. BMC Developmental Biology. 9, 33
DE POMERAI, D, MADHAMSHETTIWAR, P, ANBALAGAN, C, LOOSE, M, HAQUE, M, KING, J, CHOWDHURI, D.K, SINHA, P, JOHNSEN, B and BAILLIE, D., 2008. The stress-response network in animals: proposals to develop a predictive mathematical model. Open Toxicology Journal. 2, 71-76
BOKES, P, KING, J and LOOSE, M., 2008. Mathematical Medicine & Biology. (In Press.)
COOPER, M., LOOSE, M. and BROOKFIELD, J.F.Y., 2007. Elsevier. Available at: <http://dx.doi.org/10.1016/j.biosystems.2007.09.004>
SONEJI S, HUANG S, LOOSE M, DONALDSON IJ, PATIENT R, GOTTGENS B, ENVER T, MAY G., 2007. Inference, validation and dynamic modelling of transcription networks in multipotent hematopoietic cells. Ann N Y Acad Sci. (In Press.)
SMITH, J,, LOOSE, M,, WARDLE, F,, STANLEY, E, and PATIENT, R,, 2007. Germ Layer Induction in ESC 锟斤拷 Following the Vertebrate Roadmap. In: BHATIA, M,, EGGAN, K,, ELEFANTY, A,, FISHER, S,, PATIENT, R, and PERA, M,, eds., Current Protocols in Stem Cell Biology Wiley. (In Press.)
LOOSE,M,, SWIERS,G, and PATIENT,R, 2007. Current Opinion in Hematology. (In Press.)
SWIERS, G., PATIENT, R. and LOOSE, M., 2006. Developmental Biology. 294(2), 525-540
LOOSE, M. and PATIENT, R., 2006. Current Opinion in Hematology. 13(4), 229-236
PETERKIN, T., GIBSON, A., LOOSE, M. and PATIENT, R., 2005. Seminars in Cell & Developmental Biology. 16(1), 83-94
LOOSE, M. and PATIENT, R., 2004. Developmental Biology. 271(2), 467-478